Data Analysis for 10x Visium Spatial Transcriptomics Data: Workshop 1

September 12, 2023
9:00 am to 11:00 am
11110 Hock Plaza

Event sponsored by:

Computational Biology and Bioinformatics (CBB)
Biostatistics and Bioinformatics
Duke Center for Genomic and Computational Biology (GCB)
Precision Genomics Collaboratory
School of Medicine (SOM)


Franklin, Monica



Miko Liu
As spatial transcriptomics becomes a more prevalent tool in cancer, neurology studies and more, do you wonder how to analyze the data to make sense of the biology? This workshop includes three hands-on sessions (1.5-2 hours each), that will: •Introduce the 10x Visium platform: experimental procedures, applications, advantage & disadvantage compared to other technologies •Teach you step-by-step the analysis for Visium data: preprocessing, clustering and visualization •Downstream analyses: integration with single-cell data, using deconvolution tools to find cell types and cell-cell interactions

Computational Biology Workshop Series